Scaffold Ga0164321_10035921

Overview

Basic Information

• Taxon OID: 3300014903
• Scaffold ID: Ga0164321_10035921
• Source Dataset Name: Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay12, Core 4567-28, 21-24 cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1792
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Gulf of California
• Coordinates
  • Lat. (^o): 27.009
  • Long. (^o): -111.4081
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003807	Metagenome	467	Y
F022658	Metagenome / Metatranscriptome	213	Y
F051963	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164321_100359212	F003807	AGG	MTETHDVWLKSDDEKLRSLISDEAKMIPMLENMQATIRQLKAKQQFRLALLNQLLESLHGETK*
Ga0164321_100359214	F051963	AGGAG	VALSNLPLVDKAKVVTYLRDVAKIQTPIIEVSNTFPSEDDNIAYGLYVDDVTENARSVNQLGVQSCASMYNAEDQFNILYISFQNDPQAPVILNSINNLAANVNFFDGYTSVEFDRDVTIGQRSEIHNYTFTLTRLEFNNAYQS*
Ga0164321_100359215	F022658	N/A	WLEFGWWPQYCDTVMGATYYTNLPNGQMISAFNPNLLIKNDQTLIRLDTFMAVKIFYESIVSDTSNVNSVDAANYGHALERFEKEQEKALQLMNFYDLNQDAPDGPTTKLEENWTADPDYFNNNRRWF*