Scaffold Ga0180302_10121098

Overview

Basic Information

• Taxon OID: 3300014887
• Scaffold ID: Ga0180302_10121098
• Source Dataset Name: Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay17, Core 4571-4, 12-15 cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1172
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Gulf of California
• Coordinates
  • Lat. (^o): 27.0154
  • Long. (^o): -111.3798
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016235	Metagenome	248	Y
F024940	Metagenome	203	Y
F024941	Metagenome	203	N
F040961	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180302_101210981	F024940	N/A	IIYKKIRSTKELKNFITEYLIEHSEQRAKAMLTQNTFVIAYEQGFLDALKTIRDLLSKEGLLMYRYVFEEEQKREEDENRDTF*
Ga0180302_101210982	F040961	GAG	MVNAAECRWSEEQAKGLITFLIAEKKRHERDIHNIERSIQRIKREFSLTDADIAKCEELAWLYVEF*
Ga0180302_101210983	F016235	AGGAGG	MSKIKISSSPPLFSHKQWSHRKGYQKCVKYIGIDKNNEKFGKGFPLCAVIKFRIPVTRYTPRTYEIAKLLATLRLLYGNEYMEELNALAEIEYLKIRRRLKWLTLSGDGSD*
Ga0180302_101210984	F024941	AGGAGG	MAYAFWGRLGLTKGEQYRQLLERAWNLGWSQRKFFREARARGLGYAEALMREDWHRFSYVESARTYSGKLTQHVFFDEVVKKLHYEEKWSWKEIKEFLKERKEPERWTPETKVKERIYKSYLKEALPE