Scaffold Ga0180302_10006674

Overview

Basic Information

• Taxon OID: 3300014887
• Scaffold ID: Ga0180302_10006674
• Source Dataset Name: Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay17, Core 4571-4, 12-15 cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5641
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Gulf of California
• Coordinates
  • Lat. (^o): 27.0154
  • Long. (^o): -111.3798
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016098	Metagenome	249	Y
F016235	Metagenome	248	Y
F024940	Metagenome	203	Y
F040961	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180302_100066745	F016098	GGAGG	MSEERKYVYLRRTRSGNGVRMRDGEIIYVASIRSLEAFLHGDREFVAFMRFPYRQIAGENAERDILYTFCDKCGAGRFFRKISEDKWRCETCGTERTTTELIEKMRSILESD*
Ga0180302_100066747	F024940	GAG	MEREIIHKKIRSIKELREFITDYLIEHSEQRAKAMITQNTFVIAYEQGFLDALKTIRDLLSKEGLLMYRYAFEEKKEREEDENRDTF*
Ga0180302_100066748	F040961	AGGCGG	MVNAVECRWSEEQAKGLLTFLIAEKKRHEKDIHNIERSIQRIKREFGLTDADIAKCEELAWLYVEF*
Ga0180302_100066749	F016235	AGGAGG	MDKSKISSSPPLFFHKRWSYRRGYQKCVKYIGIDKNDERFGRGFPLCAVIKFRIPVYRYTPCTQEIAKLLATLRILYGEEYMEELLALAEVEYLKMRREQKWHIHFGENSD*