Scaffold Ga0180063_1014281

Overview

Basic Information

• Taxon OID: 3300014885
• Scaffold ID: Ga0180063_1014281
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2133
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9229
  • Long. (^o): -106.9516
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013143	Metagenome / Metatranscriptome	274	Y
F051769	Metagenome / Metatranscriptome	143	Y
F095084	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180063_10142812	F013143	AGGAG	MLSRFVLGAIVGGIAVYLWGDEIRRFANTKSRTARLAAADTLKAVQSTAEEMFDSAKDQVASTLQSGQDAIRPARANRDR*
Ga0180063_10142813	F095084	GGAGG	MSGMPALYCRTCNAFREIEDWRERGEALVIALEPCGHEIRRRAGIEWPLHTVAA*
Ga0180063_10142814	F051769	GGA	MNAHVASGRVAASVVLAMTGLGLGLLLLGSRRFTPLPVARCPIHGIAYDTELEVCPDCTKTDAAGGTGGAR*