Scaffold Ga0180096_1031807

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0180096_1031807

Scaffold Ga0180096_1031807

Overview

Basic Information
Taxon OID	3300014862 Open in IMG/M
Scaffold ID	Ga0180096_1031807 Open in IMG/M
Source Dataset Name	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT293_16_1Da
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	551
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9228	Long. (^o)	-106.9508	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013455	Metagenome	271	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180096_10318072	F013455	GGAGG	MSNPRREGTEGGVGSGKRPLTKANAMTDTEIFRASWPGVLVEMKDYVDLWFLAMGTQRQAATVRIYISSTLVQQAKLQPHVREFRASIAHIPNCRIELRGTDEAAHKIEIEYRR*

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