Scaffold Ga0180096_1001827

Overview

Basic Information

• Taxon OID: 3300014862
• Scaffold ID: Ga0180096_1001827
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT293_16_1Da
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1113
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9228
  • Long. (^o): -106.9508
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027114	Metagenome / Metatranscriptome	195	Y
F066481	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180096_10018272	F027114	AGGA	MLRKSIQALALCLLCIGPPAAQAENAGTQKGELIWRDPSCFFFVLKVDEHYALFEFLGGPSPMVGHFFEGKLTEFGTRRIENTTEGKPTMVYSEVYDLSKSQMEKKIPKFCKKRKEFEALAG*
Ga0180096_10018273	F066481	GAGG	MNTGDRPGLRPRSATLRRAGRQAAAAVVFCALFASPAFAEQGMVIWKNHECGCFILQMKSGYGIFEWVDGPQPNDGDVLEGDFRSAGERQVDNKTIDLPTTILLNAFA