Scaffold Ga0182027

Basic Information
Taxon OID	3300014839 Open in IMG/M
Scaffold ID	Ga0182027_10053982 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014839 Open in IMG/M

Scaffold ID

Ga0182027_10053982 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5014
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5014

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F007120	Metagenome	357	Y
F015428	Metagenome	254	Y
F093116	Metagenome	106	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0182027_100539821	F007120	AGGAGG	MKTLVITLTVVCAAVAYYFGLRYFTGQDLGFTSARKYVRNLAKNLLHTDITTAVKEDAACHS*
Ga0182027_100539822	F002761	N/A	MVWATLGKLNELVHFVGFKKSNPRQTVLHWINAHKVVTITLTEAVNYSVHGITNPLGVVFALGGTLVNIFTVMFIVPIWCRLSNLERH*
Ga0182027_100539824	F015428	AGGAGG	MTGILELFALFEMVSGICFLVRWRSRLLASKVNYFHPPHNKKSPIDKLVRGQTGPVVTRQDRIYVKLADGLTVLVRRLVILDAFRQLMRALALPSSPLRRKLSRRKRP*
Ga0182027_100539825	F003859	AGGAG	MDEPNAERTSTSGRSWPGANLYKSLKLGWRWRHLRWAVAAASEAAQGHEANGLPPGSREFKTLFSEIARKVQEYSTESGDPLDTLKARLPALCALERLANPAPTVLRNKAGLTLGILIAAVLGPIGIGALIGLGTGMAHWIAHLFG*
Ga0182027_100539829	F093116	N/A	FDDSVLALLDPEIVQHWNNLPAYPWVAATPTEVQVIDDGDAIFDRHPKARLYDWRYVACMVQDAKRGQTGIGYVVNAITWFNLLWLHRESIVAELRAMQPSPQVAEAIRWMEQELPQSRMPMVASRLEEIIDALKMNGKSIDWANDVITEFRQSCPVAPRFWWQGGYQSQGRIPRDRIANGNEPIPVTTAMDVAREQWIELFQKARRFADKESWRHCWRVPPEIRSFTTRPEAKAAARDFWMFYNHTREAKKADFLKAGKDHRGKRVLTEQDAGIAAYLYAEEDVHNRIKASGMYLDIYAELVKLVFDRGLTLEPPRNPDGTVKPIADGILGGPHTLDGLLDIARAAGVTRRHVPLTWESARVCQDYGDLNLDIVLEDTLVRIAGSSSTSANWIGIVDLPDGQYRMEHGLVVTEDTIEAQPQEPAVALVAVNGFEQRLKDQRLEQEDRQRIEAELKAFRAQVCNGVTIKPVTYRNPETEEDEAGAEVFLEGAFEPLGWISQEHLAAVTGELKGVRVSGGQYSLKVLCPLPEQNAHK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182027_10053982

Overview

Ecosystem & Geography

Associated Families

Sequences