Scaffold Ga0182027

Basic Information
Taxon OID	3300014839 Open in IMG/M
Scaffold ID	Ga0182027_10021581 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014839 Open in IMG/M

Scaffold ID

Ga0182027_10021581 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8594
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8594

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000586	Metagenome / Metatranscriptome	1007	Y
F017652	Metagenome / Metatranscriptome	239	Y
F028569	Metagenome / Metatranscriptome	191	Y
F061081	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182027_100215811	F028569	GGAG	MMKTTHFGSNRSYGLSKAILLYSDGQEAFATVHEPKDSPDGGPPYLDAGEPLSVGFLRDLARALGQTVQREILPANVLA
Ga0182027_100215812	F061081	GGA	LIAPGYSLSVPRLDQVGLRHSSFGSDAAAARFATILVELGIGSPSDWIACGREPAKFLRRTLDRFVKSHAEPAIDGAFELSVTLSTDPHEWCETEDEPDGSQMFIYMEAASCGFVNLGPALTLCEKEDPRLPVTFARLFLRGLERLFRIYDDRDAEEHLSFLQDNCDPEEDREALAALPDRKNILPACTDQRPLGRRALIATLARMAPKNRVLRLLKAALELDRISRRVRFPEIPEPVREMFCDCNPPVPILLAIYQQGDAIETCFDDESQSMLEQTPEPWPLIPFNGTDPTSTKRAFGCLSGALETLAAARRVLDLVPDWEAIRRERLRP*
Ga0182027_100215817	F000586	N/A	MNHANPDTMRARARQAIELLKTQLVDTGTVQPLVALYFDDHIEQVQFEDPSVLDQFDIRTARSFDYLRALVGIKAPQAAIMTLDVRMGPFENDEREVLPEQTAIFLMLDSPLLTIQVILPYTRSGGIVAVSGVQYTEMPGTEGTAPCPIFKLFSDAPVGVC*
Ga0182027_100215818	F017652	N/A	EMKAEIQERLLREVAELGEDEAQRRRAERLSRDPILGGFLRAKMANGKGSAQHTPAA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182027_10021581

Overview

Ecosystem & Geography

Associated Families

Sequences