Scaffold Ga0182027_10010257

Overview

Basic Information

• Taxon OID: 3300014839
• Scaffold ID: Ga0182027_10010257
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13346
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (57.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000451	Metagenome / Metatranscriptome	1124	Y
F002448	Metagenome / Metatranscriptome	558	Y
F021252	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182027_1001025711	F002448	N/A	MINPKTILAEWVTALQALPNLVEALGGDGNRIQFYTENATVFGQPTQNNIRLAILSMPPGSILIAWQGSGPGRLGNALVFVHDFSLYLRAPEEADVGYEDLFNWIVNDVPAGGSLRMLHTPVDPNCEPMDFYLPSARRNTVVISPDGATFEYFEVPVRLVESYNP*
Ga0182027_1001025718	F000451	N/A	MPRFQTVIRRARFVYSPYTATEMQGFAQGLADSIRARIQSGQNIYDQAAAPLKPGLPGRRGYPDYKAARGLQPIRDWTWSGHTLRCLKVLTANENRAAIGFLDEAMPGRRQTASQIAFYNNQRERQWGVSPRDRQAVLAAFLARPIVMLKAA*
Ga0182027_1001025719	F021252	AGG	MADQAERVILEAEDQVTPITNKANAALDGFEKKAESSHGKVIRISDQTRSSVQRLIASLEKQAETYGKSGVDRLITQRDQLLQRYNREPQAI