Scaffold Ga0182030_10581063

Overview

Basic Information

• Taxon OID: 3300014838
• Scaffold ID: Ga0182030_10581063
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1088
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001473	Metagenome / Metatranscriptome	688	Y
F036729	Metagenome / Metatranscriptome	169	N
F085625	Metagenome / Metatranscriptome	111	N
F091190	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182030_105810631	F085625	N/A	ARLGVLALELPRAKPDAKTAQPTVLQILFPVDHSGNLTATLVL*
Ga0182030_105810632	F001473	GGAG	MEPEYQTVSQMYERLVSMIRQHNDTGFRLAATDAALQPRNPFEPANRRRPKPAVAIAIGLFAVLVLVFLYFSFQHKG*
Ga0182030_105810633	F091190	AGG	MSIFNQELLPYLASTTDAMTGEPEDARVENEPESRLQEILFSEVLTSLCYWSMVLLLAIVGAGLVCWRLTHPGPSAEPVSDPFGVTTPAWMIVSLPPLGVVAALGQAAWCAARGQRVWRMLATAAGLIAVMGVTTLLETHLAAL*
Ga0182030_105810634	F036729	GAGG	MIHHSENPRREMSNGEAGVVGAILGFGLIALALYLAVARYHIRKEQLVEAALYLFIITAAIAVPVLRRFS