Scaffold Ga0182030_10054760

Overview

Basic Information

• Taxon OID: 3300014838
• Scaffold ID: Ga0182030_10054760
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6253
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F002560	Metagenome / Metatranscriptome	548	Y
F004412	Metagenome / Metatranscriptome	439	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182030_100547603	F004412	N/A	MLKGKPMENKPSSAEQELPPEQAAAKAAILGECDRLAEAGITFVAVHFDGSGDEGVNEDIKCYATEDYAYEESEAQATNFSYLQEHFDALVPYGYENNCGGFGDVILNVKTRKITVERSDRFEDYTTSTYEV*
Ga0182030_100547606	F002560	AGGAGG	MIEYSPPPSADSTWPQVIPLPVALYVSDELIFELYDGGQPCRRFSIRWERLVPSKENEHDAAPQSSQTGLRTHQD*
Ga0182030_100547607	F000208	GAG	MAMRIRVTTKADLFEERKQQHIERGYRLEDERPIPVNGLCSFIAVSEIPESDGVGDLVAQALNGTAR*