Scaffold Ga0182030_10054044

Overview

Basic Information

• Taxon OID: 3300014838
• Scaffold ID: Ga0182030_10054044
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6315
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000065	Metagenome / Metatranscriptome	2788	Y
F001851	Metagenome / Metatranscriptome	626	Y
F087602	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182030_1005404410	F000065	AGGA	MSHLTNKPVLKLPRSLQPPLAHPGATPDSDRAKKPSLVDPVSTGQDLNPGDRVEGLGDFGKSTGEFGTVVRTNEDDAIVKWDDDGRSRLHQPWLKKV*
Ga0182030_100540444	F087602	AGGA	MPFAAILREVEQLNNVSTRLAGLADQHLPISEALLTIAGTVRDTATVLAVLVVAKGPKPI
Ga0182030_100540445	F001851	AGAAGG	MNVITVFFGLLIGLLTIRLLYRMRNLKPQVAAYGTQRMCPSCGLITSRLKSHCLECGKLLPAVT*
Ga0182030_100540446	F000042	GAGG	MTNTKFVVKVNRGGTRAPEYVQRVDPTPIHMTTNRKLALVMGKFVAEDAVKFLQTSRRSPELVSVQVGA*