Scaffold Ga0182030

Basic Information
Taxon OID	3300014838 Open in IMG/M
Scaffold ID	Ga0182030_10031750 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014838 Open in IMG/M

Scaffold ID

Ga0182030_10031750 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9261
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

9261

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (33.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Planococcaceae → Planococcus → Planococcus versutus	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Planococcaceae → Planococcus → Planococcus versutus

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F030662	Metagenome	184	Y
F048735	Metagenome	147	N
F089761	Metagenome	108	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0182030_1003175012	F048735	N/A	MTYNGLCLDTPIDTTYGISFLENQPQFIRELAAYRLTRGKFGKREMARRKIRIEDTDLKNPAQHMVNLFGLIYKNDVSLKSQGVANNYTLDIIDLFCNENDWGIAGCASSGKTFSIAACIVADWLCAPDMTSTYVASTSLEASEDRLWGKVCSLYRIAMRNLKKEYGNDASIGNMIDYRRMIVFESIDTRDPERDYTNAIKALAFPRGGEGKRAVENTRGRKNWRMRLFLDELAEMDLFALDTRVNLGRNYDFIFGGMANPSATSNNPHTELCQPSDPMEWDSVNRYTKKWNTRTGVALHLSGEDSPNFKKPDAIIPPFESYLTIEGEELSLKQCYGNKNALEYWRNVYGWWPDSSVELTIFSKQFIAGCDITWEPTWSDRTKVVCGFDPAFTAGGDRCAATFCRFGKNDTGRNLGFYLGTREYAASVGEVFEESIARQLVKDCIEYGIHPRDFGLDISGDGGKMMRSIIIEWSKTHPEAMFIFPISSMGMPTERRISSLDKRTCKEAYDRIVSEYWFAVHTALSTRSLVGIDVDKHAQVVNELCSRLYYHKGRKVAIEKKLDMKQRLKKSPDLADSLVYAVQMLRRAGLEFNFDEEKESLDILEISDWENRLIRNRGTSDNPESEEDMSYSGMSQDEDGF*
Ga0182030_1003175013	F030662	AGTAGG	MKLKDRNGPIPQGLWYQYSDDKGNTHRVNGMEVTFGSQFFQKVKSDMKNNNVAIPENLEYLIEQQICKRIAGQYCWQEAGDAVANVIHSFAHLGDKVAATFGVNSELETRAKNCPSCQKRRDLLNQTIG*
Ga0182030_100317502	F089761	N/A	MTSRYPDKDLTKPSIMLLRSLASALGLGASKDPGGYGGMKLERKRLSDALKNNVSDPRLSEWDRDMINGLD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182030_10031750

Overview

Ecosystem & Geography

Associated Families

Sequences