Scaffold Ga0182030_10030500

Overview

Basic Information

• Taxon OID: 3300014838
• Scaffold ID: Ga0182030_10030500
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9524
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004581	Metagenome	432	Y
F012937	Metagenome	275	N
F038945	Metagenome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182030_1003050010	F012937	N/A	MATQVNPLEEHAAGAKAGRRGSKAKEKQAEYTAPADTDFPYAGQEADPQQELDTLENQADAPVRGSYLREKDGYDALSPEQKAVCDKDFESYLDRLTRPIEAKDGETRQDAILRAKKEYCAARQEHTAHHREMAKTMLASKINCLNSEYPRNSFSLKNPDVA*
Ga0182030_1003050011	F038945	N/A	VFAASKKAALREFSVLAASVETGGSATKEFNNTFALSIERPPIGAPSQNLRIAAEPLPEERQELAAIFGKCAWYHSNQSGRTPEEREQRRAARSKTTQELER*
Ga0182030_1003050012	F004581	N/A	MARHIELSMTPQHQQKHGGPDPISTNDITLATTLMNSVYGYPAGKQSVLALSAGLLPGEERSQTVRGLFRMTAACSEYDQTLSYTLLPLPGREIETANLLKTTAAYSIERAGAHARQIQPSTRHPVQLER*