Scaffold Ga0182030_10008170

Overview

Basic Information

• Taxon OID: 3300014838
• Scaffold ID: Ga0182030_10008170
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21726
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (65.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002288	Metagenome / Metatranscriptome	574	Y
F007017	Metagenome / Metatranscriptome	359	Y
F017734	Metagenome / Metatranscriptome	239	Y
F101013	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182030_1000817018	F101013	N/A	MTSIVQVEYRLSLLSIRQEILESLGHPVISVVGSRAARNLDLSNRSPGVIVIGHGASRQERQGLINYFRKAVPGVPLVALLRSRDDEFSAVDCNCRADDPPLWVRTVTQALAGIE*
Ga0182030_100081702	F002288	N/A	MSETDSFRKRRTFCWSKEARGLVRDYKARVGSSIGSNEPDWRKLITTLTEISENPRDACLRFVRQFGITRKRSYREWTKREQQRLLDLITALPVEEAARILNRPPGSVRSMLHRLGIGGRTGREWFTKYSLSRALHTRPDEIQKWIALGWLRSRALTTAGVQAHVIYPDDFCEFVKQHGRSVVGRRLTYDRLWFVQNYVFPPSHAELLSVRGTYNKQPAKVEIDPSSVGESLDDSEERGELEV*
Ga0182030_1000817026	F007017	N/A	VEIWGPGGSYINPEWKEAMFRDASQHLGKLQQDLGVKADVLIGTGDVPKVLSQLAKQTKADLLVTGCYPYGENLRTHGYAIICAVSIPVLNV*
Ga0182030_100081705	F017734	GAG	LFRRVQDANEYNFTAKDGGTWEIKSDSVKLDEHVGHTVKITGVVANATAHGMKEDTKEEMKEHGMDTHAERGHMTVTNLSMVSDTCQK*