Scaffold Ga0182030

Basic Information
Taxon OID	3300014838 Open in IMG/M
Scaffold ID	Ga0182030_10000599 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014838 Open in IMG/M

Scaffold ID

Ga0182030_10000599 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	69224
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (60.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

69224

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (60.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000065	Metagenome / Metatranscriptome	2788	Y
F001385	Metagenome / Metatranscriptome	709	Y
F001403	Metagenome / Metatranscriptome	704	Y
F024149	Metagenome / Metatranscriptome	207	Y
F049409	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182030_1000059917	F001385	N/A	VIGDAQNEVPAGVRAVAALFALCAIYLGVAGISMMARPGSVPMSSGAWLLFSLELAGPYMFLLTAAAGFAVSLGLMKLNNIARHVAMLIAIAGIVMLVPPVSDAVALANVKGLIAGGLGIIVRVIVAWYLGRAEVAEQFQRPR*
Ga0182030_1000059927	F024149	N/A	MLRESSCILQAAIGPRKTLLENARCLRCNRELESGRKFVAIYMFAQTVGIKPRQKSAAHRIVFCPQCSVSLALGLSPEGALNVAAWDMIRDLVSSDPALNQAAWENLRGVVRLLEADESESEPEQRSDAWVNFSRAV*
Ga0182030_1000059930	F001403	N/A	METTSLDFAYLESDPRTTLPSACVYLKTGGREDYDGIKAAKLVSSPCLSFIELDAEIRRLHAELDEIRARAKKKFYKAYSTAVGA*
Ga0182030_1000059934	F000065	AGGA	MTDVTNHPIRKLRKAAQPPLSHRGATPDSERAKKPRLAEPSATGQQLGPGDRVEGLGDFGTPTGEFGTVEQTNEDDAVVRWDDDGRIRIHKPWLKKI*
Ga0182030_1000059936	F049409	AGAAGG	MKTSLKSVVETLNRDANELERCAQKLNSISHDLALDLGSDTELINLKVASIRKRVESMERWE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182030_10000599

Overview

Ecosystem & Geography

Associated Families

Sequences