Scaffold Ga0182030_10000140

Overview

Basic Information

• Taxon OID: 3300014838
• Scaffold ID: Ga0182030_10000140
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 117828
• Total Scaffold Genes: 105
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 70 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000290	Metagenome / Metatranscriptome	1362	Y
F000386	Metagenome / Metatranscriptome	1203	Y
F000407	Metagenome / Metatranscriptome	1172	Y
F049768	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182030_1000014023	F000407	N/A	MSRVLDSGALAAAILALVGCHGAYAVRPIPRIAADSVGKPVARLQEAFGEPRKIETTPTKEVYVWFLPQKPAGAPAGFHGCEMEVTVDARSEHVLGYSLSNIGWSKCREVERRIRVAER*
Ga0182030_1000014026	F000290	GGCGG	VWADLARSDAEQNQRFLAEELALLLADLLRSVLSDASPALPADEASVERYRRLADSLADGETRRRTSLGITRAGLAKRCVTWLKLLLTPAPNAHSNAPMREFIDALGLFPALFDSEPSARSRRARLTWLLTHDRRLDASTREAATALIEACEHLGVLLWPDADTD*
Ga0182030_1000014034	F000386	GAG	MSDAASSYLNLHVPPDEMVRYIQDLMTLPQGEIAAGTAMTLAQRQWGGDTPLARAALLRWGALNLAFQDKRLDTWTVARERDRIQVPAALVAAAGIAPLVMDNERAVFDIPALLDATLEFQPPAGQA*
Ga0182030_1000014050	F049768	AGGAG	MQIVHKGLLLSSIPLLLVSTAAVGGLNGVDVTITNDGTEDVVVTVYDTSTQPNSVVLSHERINGFTRIPVSLAPDDSGRGNIAWTAVTADANSRKCGHASTQGLSDSASVHVHADGACEST*