Scaffold Ga0182030_10000029

Overview

Basic Information

• Taxon OID: 3300014838
• Scaffold ID: Ga0182030_10000029
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 186524
• Total Scaffold Genes: 162
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 103 (63.58%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069613	Metagenome / Metatranscriptome	123	Y
F074276	Metagenome / Metatranscriptome	119	Y
F093076	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182030_10000029147	F069613	GAGG	MPLLVIAVILFALFLVMGVLATVAVLNETRGMSGSVLKLKRTRNLPQK*
Ga0182030_1000002952	F093076	GGAGG	MSGSHHNDVYLYAAYIVVWVVHSVYAYTLVSRGKRIQRESRELNRR*
Ga0182030_1000002959	F074276	GGA	MRGKKRRYTFVLEFLGGTYVRQASGDSPELALRAWLRVASQEEFEWERHRLELLRELGNKVAVPVEGCQNVWCLSGLAGDYLYLIHIIGTESGSGAGKTVAEAQLERMGVDAKFRGWKPT