Scaffold Ga0120171_1071152

Overview

Basic Information

• Taxon OID: 3300014827
• Scaffold ID: Ga0120171_1071152
• Source Dataset Name: Permafrost microbial communities from Nunavut, Canada - A3_80cm_18M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 961
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Axel Heiberg Island, Nunavut
• Coordinates
  • Depth (m): .8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029510	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120171_10711521	F029510	AGG	MDRLKHLHVRLLAALCITGFLFAVPQQRSSLAVHAASTTAQSLCIAHHPQDFVWYTHSCTGHDEPEIDPLSNNPGSAQNLTWTVVLPTNGASTPVDSVGPTFWIGGAVTDPNSLVGQAFLELQFYPNSLVKGCSSGGGYNVVQDPGVYTACSPVWEVSKKGSSESAAFNAMLTDNASGGPLVMHAGDTITDHQFITAAQDGMHITVTDLTTGHSGTIVLNSKIDGPLMPAFSVQKLGNAL