Scaffold Ga0119954_1017443

Overview

Basic Information

• Taxon OID: 3300014819
• Scaffold ID: Ga0119954_1017443
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1490
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017998	Metagenome	237	Y
F031098	Metagenome / Metatranscriptome	183	N
F037728	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119954_10174432	F017998	N/A	MNLERLDLEKYEVLELERNNTIADPLYQQWMSELGVSSSYTDREGIIRANDLNNQYTYSVLAGNKSTKFSVSSILSVFK*
Ga0119954_10174433	F037728	N/A	MEIHSDFFEVGYCSNGKDRYLIGLDIKDVVSFNPLSSKHYKMSIDKVTNEDGNYGIWLWDMGENISYPMSIMPDNISSVSEFTSFLNNTLKVADRGEFSGSNGCMIK*
Ga0119954_10174434	F031098	N/A	MKTYYDIAIHTATKDVVNIKGVSYSQMMKIANDNPTLLKVEIVKEYSKKISKY*