Scaffold Ga0119954_1013103

Overview

Basic Information

• Taxon OID: 3300014819
• Scaffold ID: Ga0119954_1013103
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1812
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025023	Metagenome / Metatranscriptome	203	N
F040082	Metagenome	162	N
F058107	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119954_10131032	F058107	AGGA	VITIGMDSFIVCQLCDGEVRLDTKRITGCLCDPDAPTWVGIEPDGRVLTFSQSNYEIITDLGPRHQYD*
Ga0119954_10131033	F040082	GGAG	MTGDTFAMSQEIVELQTRVAELSVALERVTEQRDNAVDAAESLHQELEASRDRIRTLGGQLDRLRIHLQQGIEL*
Ga0119954_10131037	F025023	N/A	RHRPSREERPQEGKEMTDLFEGRMMDVGVDRTCVLQLQSDFDSLRPHQRAMVKKIATECNEYGHSISLDSLKSHRRYQIGRGLVDLIMSDNCDELLITSLCHSIQGVLFKTAGGAIGHLDAECAEQFAVICRAIRWDEQDIVWNTSTDSFGFPKQKASK*