Scaffold Ga0119954_1003648

Overview

Basic Information

• Taxon OID: 3300014819
• Scaffold ID: Ga0119954_1003648
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4365
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (37.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F010746	Metagenome / Metatranscriptome	299	Y
F016115	Metagenome / Metatranscriptome	249	Y
F020860	Metagenome / Metatranscriptome	221	N
F035200	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119954_100364811	F020860	N/A	MNITKVKKLAEGGYALYAIDPKTKQESQVGYIGENLDPKGWLPEGVKIENS*
Ga0119954_100364812	F016115	AGGAG	LKTLEESFTSRGFKFSLVKRDGDVAIYKKQLDEADSEAYNYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWGYTCVSREDADKRFVQLQEKLSSYVATATLPNGEKRGRGRPRKINLTKTESVVA*
Ga0119954_100364813	F010746	AGTAG	MTYKCAVSGEAIPPERVEALQVLGVPESLWTKKEYSQVRKLKAVYAGDDGSNDIVICDNVDGGNLFDNEVAVEVENDI*
Ga0119954_100364814	F035200	GGAGG	MTSKFIVLRDGVRVSDDMHDKMESAEHEAEFWREIVRRWPDGTKVTIKKIGG*
Ga0119954_10036485	F007359	AGGAG	MQLVKQNLGAHWVIGIKGNKDEIEQFHNRIYNWGGTNGELQWMSESFAYFWITLEKLERVMFKYTMNSLSDKLGKKFRGTKGGLKQVVMNRVQNTIKNIPVESFVRTAQIQDFYSIGQVSAEKLDNDS*