Scaffold Ga0119954_1002603

Overview

Basic Information

• Taxon OID: 3300014819
• Scaffold ID: Ga0119954_1002603
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5423
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006467	Metagenome / Metatranscriptome	372	Y
F026257	Metagenome	198	Y
F061658	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119954_10026032	F006467	GGAGG	VIQRIINDLVAGSWIILGLLFAVVCLPDGATKDTMSAIFTGLTLVWFFTGPLRWKD*
Ga0119954_10026034	F026257	N/A	MRDGMSDVQLSKWLEDAGHYISRITLGKHKREHLTEDHEQKRISAIKHLKKQKKTIKASGDLAMLVRDYVHSAVEQGELTPTLAEGLRAQEMIDRRQEKGADREVALQLAGILGGGATYQIIEATEIKPLGVGESEL*
Ga0119954_10026035	F061658	GGAG	MPVITEPAYLDPETGMLTEIVRDAETGEIIGKNERYPEPEEATE*