Scaffold Ga0119954_1002231

Overview

Basic Information

• Taxon OID: 3300014819
• Scaffold ID: Ga0119954_1002231
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5913
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F003393	Metagenome / Metatranscriptome	489	Y
F004132	Metagenome / Metatranscriptome	451	Y
F084233	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119954_100223111	F004132	GAG	MTQEQLSVPYNPNLLVTYKSIPGTYAAPESPTFMTDKVTEIEWDLHNGRAAVDELSRKRLDIAWLEDQVGEWYDPNYTKDEVLQAIIERFGFNPTKEIQVYGTVNFSGTISIPYSEVEDFDLSNVTIDAELSSYEYEADLIVDEISLEEN*
Ga0119954_100223114	F084233	AGGA	MTLKVEIYEVDYSCSPGGVNCWEVSIDEWCVSDFKTAGDALNYVLDKYPHQEIDLNVKSLNWYFKEFQDEYAV*
Ga0119954_10022313	F000808	AGGAG	MEYNYSLTTSYDGELIHTLRVSDMLEAVDAWNKCVDYGTAKEYATYNLSDPMGKMYTKTFYTNGEVVIK*
Ga0119954_10022315	F003393	GAGG	MIDLENDDTIQIVDYVKVDVLTSGQLEIDDCILIGNEVVSIVDIVSLPDGYTLEVVNDFGERDIIEVGEYEQFDLMMLQ*