Scaffold Ga0119954_1001409

Overview

Basic Information

• Taxon OID: 3300014819
• Scaffold ID: Ga0119954_1001409
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7981
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041641	Metagenome / Metatranscriptome	159	N
F047559	Metagenome / Metatranscriptome	149	N
F069830	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119954_100140911	F047559	AGGA	MSRMSDLSIEIQAMLEEGHQPRAIARILEIPAEWVYEQMSQESDSHEELFSPFETCNS*
Ga0119954_10014093	F041641	GAG	MSDYREVIDRARRMQDFQVQVEVPAEGFRFTGVIPYDMEIVGRQAFVTVPALSIEEAVQKANEFFQNTP*
Ga0119954_10014094	F069830	AGGAG	MSNRFDFEQEIMECWKITNDLQMYIDQGASIEDTKVLIDYYERKFQKVWDTFEALIKERKIL*