Scaffold Ga0119954

Basic Information
Taxon OID	3300014819 Open in IMG/M
Scaffold ID	Ga0119954_1000909 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014819 Open in IMG/M

Scaffold ID

Ga0119954_1000909 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Georgia Institute of Technology

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10158
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (66.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10158

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (66.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.21	Long. (^o)	-83.96	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.21

Long. (^o)

-83.96

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006893	Metagenome	362	Y
F010247	Metagenome / Metatranscriptome	306	Y
F013082	Metagenome	274	Y
F013525	Metagenome / Metatranscriptome	270	Y
F032656	Metagenome / Metatranscriptome	179	Y
F086632	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119954_100090913	F086632	N/A	MKKTVDIGILKGCFEILKKYFIVQEFTSVYKITESEKQLYNKLAKIVEGKNVK*
Ga0119954_100090917	F013082	AGGA	MKTVQQEIDRLYLASKLNSHIVANEAPYYYDLCSVEDKTITLDEFYKSFPYHNPDINSEYWKQQHNRWKEIWNEAN*
Ga0119954_100090920	F010247	AGGAG	MNVQGVIKYVYDNRLGKDGQANKFPNFKFKVGDHEVVLWSAILHPAIAKGKKVSVAVQASKKNGSLFVQTNEKKQPIIQELPLDANTEAKPDTSFNPEELEKELVQVAKDFDADLTVETKKPINKDEYMFVMALAKSAIESGKINVTKEEIDLLIKDLKFLFQINFHN*
Ga0119954_100090923	F013525	AGGA	MEDFALKNPDTIKQELDSVSEEMSNALYTFRRCEEFKKITFSQLTLTKKLEKNCSVSEAEKWAYADSNYATLVEGLLVAEKNYSILRGKYANLQSWVDLYRSWLVTNRELSR*
Ga0119954_100090925	F032656	AGG	MIXXXXDDSLKEDITYCRFFDTDCFVNASSFLASLKQVKKLRITGVEFEVEECNWFDYYEDISNTIH*
Ga0119954_10009097	F006893	AGG	MEELTIKNISELTKKVLCNPKLYKDLDFFEVPHNKVCLAVIREITKLSYNDIGKAYKKSWFTIYSAVKDTNKNGLKSFTSKVIDLVKAEVK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119954_1000909

Overview

Ecosystem & Geography

Associated Families

Sequences