Scaffold Ga0119954

Basic Information
Taxon OID	3300014819 Open in IMG/M
Scaffold ID	Ga0119954_1000364 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014819 Open in IMG/M

Scaffold ID

Ga0119954_1000364 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Georgia Institute of Technology

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16169
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (12.20%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

16169

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (12.20%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.21	Long. (^o)	-83.96	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.21

Long. (^o)

-83.96

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016262	Metagenome / Metatranscriptome	248	Y
F019993	Metagenome / Metatranscriptome	226	Y
F021092	Metagenome / Metatranscriptome	220	N
F023325	Metagenome / Metatranscriptome	210	N
F026511	Metagenome / Metatranscriptome	197	N
F052474	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119954_100036411	F016262	N/A	MIKFNKSTLTEIAGLGAGAVAGAYVSQKVLTKADGTYLVGSGTTGKLVADLAPIVVGLALQGQSNLFAKEAGKGMIAQAAGSFIKSKVPALGITGDGYSDNVMMAGTLDTGVDNPMISAVPNDYLNDDNAGDAGEMDY*
Ga0119954_100036415	F019993	GAG	MKQEVKLLLVAGVGYLGFKAYQAYVALKGLQWAPTGINFSVIKARGAIGGTVFLDIINTTAATIKIDGFTGTVTTSSGTLIGDYKAGAMTIKPGVNNIRISWGSRNSLTLLGLATDIYQGKWPVLKFNTVINYKGLPIPTPFTMDTKNFRPSLV*
Ga0119954_10003642	F026511	N/A	MNTTTDCQTIGDAQMITSDCIAIAFKRPTGSNPVNVIGYPLAEGETLTISQNVGDIDRTQYSVFFGTGAGSNVCHIFRTLILD*
Ga0119954_10003646	F052474	GGAG	VNNTIFNIMTDKEKILTAINKLAKIDANLAENLTKLAELAERNKFIYDQAVKQLKSL*
Ga0119954_10003647	F021092	N/A	MTDPHYILEFMQDNDLRYFQIANTHNRDVVTSFNDRSLEEGVEKMKKFLTKNTGFHRIKLYTNNEMKSNGIPKQEPQIFEVSITGKEFDPPKEEKEISGFAANPYPSAGGIIGVEQYLSKHEENATLREKIKGLELELQYLREQHQREIDRIRQDHESALKAAKDSNQMFSQGLGMLMNRMGVGE*
Ga0119954_10003648	F023325	N/A	MRLISPLIEYLAVSKKLKQVGSYEGSFTKSVYMPFYANARVGDSYYMQPDEVLDSKNNDITAIEVVDSVTCATAPTSPATDPISATQATQGYFYFCNLQREVVAYVPLNALIRRLNAGKVQFCNFDEPIVWQNCFVQFDSLSTAITTANCVWLRVTYSPKEN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119954_1000364

Overview

Ecosystem & Geography

Associated Families

Sequences