Scaffold Ga0119954_1000358

Overview

Basic Information

• Taxon OID: 3300014819
• Scaffold ID: Ga0119954_1000358
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16220
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (86.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006894	Metagenome / Metatranscriptome	362	Y
F078640	Metagenome	116	Y
F081271	Metagenome	114	Y
F085621	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119954_100035816	F081271	GGAG	MSRYILAGFESEELEQSLRDSPVFPLVRDMCHKFGLKVLAETELGGITQFQMCLTNGMAVGKVYTNMNKDNKLEYCYRTPYYKKERGSSDEDKQTLRSTKVSSLMATLSRVEAVITIDKLIGKKMGKLVDAKDIMEKSMGNSGKATYELSADEIHALLCSFLGESPSSNHVAVDTLKCKKVLDKYNEADRVRVKKLEEVDRFFSNPFYMIGADAFGHFIVGKVKVTGEKEYEIVEQFKRYADITERDDLIPVMTMTKLAHEGKGHNLQNGYIPVTDMYDENLDAVFFYHTQATHYDYIWMATPCTPC*
Ga0119954_10003583	F085621	AGGAG	MGRMKDLLIDTTDEELQILLANFKPTAEELQAELDELQAHQMSLPVVSVQPEYKVYLLMKNGFPQRSYTDRSLAFYECWICTMGDEALGAEEPDDWYVVEIMHDESTYTGE*
Ga0119954_10003584	F006894	AGGAG	MNDFFWNYRIVNTKTANGGEDWYCIQEVVYSVDGKPESFGAPCLGSESMESFGDVWFMMQEAMTLPPLQEEDFNHE*
Ga0119954_10003587	F078640	AGG	MNRDDMTHMEAVFLPIDRDRPALPYDEFITEGGRHPIGGDIESKIGGHYYAKYVFPNGTEVSVVCGQLFYSTIDAPYEVMFEDEDEPHGYQTDEELMILLAKAIGDM*