Scaffold Ga0119954

Basic Information
Taxon OID	3300014819 Open in IMG/M
Scaffold ID	Ga0119954_1000150 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014819 Open in IMG/M

Scaffold ID

Ga0119954_1000150 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Georgia Institute of Technology

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24317
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (30.43%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

24317

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (30.43%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.21	Long. (^o)	-83.96	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.21

Long. (^o)

-83.96

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F025982	Metagenome / Metatranscriptome	199	Y
F052555	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119954_100015020	F025982	N/A	MSCHDHALKDFDLQLEMNDLQTEMLKDGNEVIPYHGDEHDDLEAKRLKLLFGKRFHQNASNAYWYWLQKEKPCSNKVN*
Ga0119954_100015021	F001018	N/A	MAQITSTKLKELSVIKLYEHYAALEKSLPLLTPESQDLAKAELESCIDLRSEKVDRIYYAMAAHEDALERIKKESDLVATAKLHHTSQLKALKGLLSYLRRVLPLDTNKITGRNYQFTLIKKKELTVEINSDPELWDTDEKATYCMEEETTTTKRVVLRSFSGEVLSDRTEPKTTTKVLPNLDVIRCAYQNGQQLPTGVKVVQDYSVRSKRIFNEPRMDLVASEYPRELLPEDTSAD*
Ga0119954_100015024	F002333	N/A	MTTTATHDEFNSSSQATHTELNAAQATIYTRTNISRAFPDFNDSGVVGIYLRGDSCLVVYRDGTELLYPKEAIKTAFISYTHRLKDFFSYLGPNYRGPSIWHDNSYILFKGWNYSHTLGHLNDNAKLQSQWADKFIRLTDPTKLKALLQSEHTDLGHLVAPDGLRLPDRLPDLDSELEAVQEERPMFGEPNCSCGSFQRQLNNLSLFQQEIEGFKPHCIHLTWIAKYRSLLSERTKARDACPAGVPHTCVAWWYQPPMNHTSNGRFLLLHTKSGVQAPLSHWRTYKPKESFTQHHAWDLFFSMLNAGYVPFPGTSLPQLRMAFKHD*
Ga0119954_100015042	F052555	N/A	MTITTPHINEYTVLEGILKNLKAIVIRESKRPQGCEDLTPSMLALLEEEIIPQLENELDYDPILQYLYDNTGGESPITANEMYEIARAHSKLLHS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119954_1000150

Overview

Ecosystem & Geography

Associated Families

Sequences