Scaffold Ga0119954

Basic Information
Taxon OID	3300014819 Open in IMG/M
Scaffold ID	Ga0119954_1000123 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014819 Open in IMG/M

Scaffold ID

Ga0119954_1000123 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Georgia Institute of Technology

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26439
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (48.15%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

26439

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (48.15%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.21	Long. (^o)	-83.96	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.21

Long. (^o)

-83.96

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004863	Metagenome	420	Y
F006099	Metagenome	381	Y
F056418	Metagenome	137	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0119954_100012320	F004863	AGGA	MKLMVAGCSFSAVSQTQPGTAWSERLAEKLGGWELVNLARQGCSNGGIRIQMDEIRRQRPDFAVIGPTFWDRMEIPANSVPYDWNQAPSAGENPPLERHLQNRKLGNGYRREDGIRNVNYGQEPSNMICETIFTLAENFDHPYRMGRITKQAQTGIRHWIDSIYDNAWKKQQDEWMIREGVITMFLDGIRFLVLPNLLWPFDPDNNNLWREAFPAIVPDHYINLNQSYSPQSICGNNPFKGEDPGYHSSAAGQEIIAENFYQHWLAHFK*
Ga0119954_100012322	F006099	N/A	MTSAKILYLARYRVPHAIMSLQPEFTKHLIGVDRTCIASPVPKEELWPVFEQYGIDTTKFDYAPDSEIYRIYPEVNDWVFEGDYRTYWLRQQAIKFAFLDYLNYDLMIMHDCDCLLIKDYEPFKDGKLNFMVLENERHSWGYYESIKNALGFERLTPHCFISEFVPVLKKDFNDLVTFLEEKHNKKWLNAMIDSCPPEPTVPPWGNGELIRWFSEYEFIGNWAMSRQDITMEYQRRYHYDNMEKIGDFDPAYHTAVCDAVPDLRFSLQYDWDKKEILRFDYYMDKIRERLARHT*
Ga0119954_10001238	F056418	GGTGG	MRSESRSSLYYNAYEYAMTWQQDEIGCIRSLDQKKMQSHIRVRMEYEHSRNSHYQRYGEKFESKFTTRCRDNLEGMRALLATETRPKKMVFFNNYLTVYTNNLGLHGRLMACDWIESVDLKRAELNLPPDTILLKNPQYQYRTYFRGRSLGKQQKARLAKWIETQGSEVAASKSLGTFLEIGPNPIRTLWWRNDSTESYYYIEHNSLQYETMLSMVCPGMVRKTLPIVKKQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119954_1000123

Overview

Ecosystem & Geography

Associated Families

Sequences