Scaffold Ga0119954_1000004

Overview

Basic Information

• Taxon OID: 3300014819
• Scaffold ID: Ga0119954_1000004
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 91275
• Total Scaffold Genes: 128
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 88 (68.75%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013526	Metagenome / Metatranscriptome	270	Y
F014144	Metagenome / Metatranscriptome	265	Y
F014496	Metagenome / Metatranscriptome	262	Y
F016958	Metagenome / Metatranscriptome	243	Y
F027449	Metagenome / Metatranscriptome	194	Y
F047645	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119954_1000004105	F027449	GGA	MYTDNMRRAFRSIPAPNNFAISLIDNEHFLTIKLDEKSFLPLTHDEKIEAVKYVTLVKKALEMEGAVVLVTREPLK*
Ga0119954_100000412	F016958	N/A	MAGNTSSMELPTKEDVYYFIDLYKSALKKNQRVKITCDILGIDGYLQGTKPIR*
Ga0119954_1000004125	F014144	N/A	MEKGRVAVCDKCGKELEVRWGIFAHDTLSRHLKEHKNGQEAA*
Ga0119954_100000413	F047645	N/A	MTNHNLCIHVYEYVNSEVCPHCGRYTHEVDRELHYKLFKQYYDEGKHLAYKCPIEGGTIRGWWSI*
Ga0119954_10000046	F014496	AGG	MKSYSITDLLIGHTYYPRSLARKYQYGEINFAEKREDIWLDGYEAYAIRFNGNRWATVAVKVAD*
Ga0119954_10000048	F013526	N/A	MKKNVLISFVTESDTDLGAVFDLNKIFLALSESDLVKFDVFDVLDVVE*