Scaffold Ga0134300_1012306

Overview

Basic Information

• Taxon OID: 3300014818
• Scaffold ID: Ga0134300_1012306
• Source Dataset Name: Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0152 : 8 days incubation
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Battelle Memorial Institute, Gulf Coast Restoration Organization
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2379
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Microbial Communities To Study Oil Droplet Degradation From Trondheimsfjord, Norway

Source Dataset Sampling Location

• Location Name: Norway: Trondheimsfjord
• Coordinates
  • Lat. (^o): 63.43
  • Long. (^o): 10.43
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032032	Metagenome	181	Y
F060907	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134300_10123063	F060907	AGGAG	MKKLFLVIGLSLPLLAQQTETDKEITKQEQRENRTGGVVSTLQDWDFRKYEAAHSRAHAKMGEHPQRYKRAQMVREHRTKQWIKNILIGGVAYYVGYKVAQDEMKKGRKGKKPIMWAREDKK*
Ga0134300_10123065	F032032	N/A	IKVGNKHYTEEKYHPLFPSDRIITARTRKLTMEDFFNVGEVVLILLAGIFLLKIMFDFGMAMEAWSELDTIMRGY*