Scaffold Ga0119960_1046484

Overview

Basic Information

• Taxon OID: 3300014811
• Scaffold ID: Ga0119960_1046484
• Source Dataset Name: Aquatic viral communities from ballast water - Michigan State University - AB_ballast water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Michigan State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 703
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Aquatic → Aquatic Viral Communities From Harbor And Ballast Water - Michigan State University

Source Dataset Sampling Location

• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003066	Metagenome / Metatranscriptome	509	Y
F011384	Metagenome / Metatranscriptome	291	Y
F019123	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119960_10464841	F011384	GGAG	MYTKLDDQRQAKFIINYINEHPGCSIKQIVQQCVTNRTRLKYLESQGYFSLPKWTYNSELDKRFKNRNYVSVSFGS*
Ga0119960_10464842	F019123	GGAGG	MVDSKPLTQEEIIKIYKTAFAYGSQVVTIDRIFKFARLLEQAHGVKDVH*
Ga0119960_10464843	F003066	AGGA	MKEPVAWLYEEYDVKSGDLKKSYLWSFHPNQLSYLNDLKNTTHHIKITPLFPGDPVEEYKGLSRYDSKKLTEAHGGL*