NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119960_1040129

Scaffold Ga0119960_1040129


Overview

Basic Information
Taxon OID3300014811 Open in IMG/M
Scaffold IDGa0119960_1040129 Open in IMG/M
Source Dataset NameAquatic viral communities from ballast water - Michigan State University - AB_ballast water
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMichigan State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)731
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Aquatic → Aquatic Viral Communities From Harbor And Ballast Water - Michigan State University

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014089Metagenome / Metatranscriptome266Y
F037494Metagenome168N

Sequences

Protein IDFamilyRBSSequence
Ga0119960_10401291F014089N/AMEATGVTMSDYMEILYPQSMTAELLQNGELIAEYKIEQCDSCAKLTKLDAFGYTKGQGGEKLIWLCGGCR*
Ga0119960_10401292F037494GGGGGMKLKASMEDKVLAHTVALERIAQVNGHPDAASRYDRQLGFHDYVAQVAESIVAEILVARYLGYSHFDPRSSQFKKTADVGSFIEVKWTRYESGQLIICEGDRATDVAILVVGTSPNYRLAGWIPVAMAKRPKYKNSKQPTWWVDQKNFHPIVTGK
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