NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119960_1004452

Scaffold Ga0119960_1004452


Overview

Basic Information
Taxon OID3300014811 Open in IMG/M
Scaffold IDGa0119960_1004452 Open in IMG/M
Source Dataset NameAquatic viral communities from ballast water - Michigan State University - AB_ballast water
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMichigan State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1037
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Aquatic → Aquatic Viral Communities From Harbor And Ballast Water - Michigan State University

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061533Metagenome131N

Sequences

Protein IDFamilyRBSSequence
Ga0119960_10044521F061533N/AMSNQLEGIEQKDIIKRVTGKVTKLWEPKTFNGPKGEFVIQGGDIEIDGQTYGLKFFNNTQEQSIKGNVVTLSSVRGKHGLTGVSLEHESYEGKNGKVDRDIIKVTATGKVEFDRPSEEPARVTSTPKTIVTDNPEKALDEIVEMHQYIDSLVRMAYLGKITDEETLRSYVSSVFIEANRKGIHYSSKVEAPKKEEPKAEEFDPKDWASAIVPSGSHKGEKLAEIGKKDLTKLYQFYLEKGFTTPFSKCVEQAAIDFNLDAPVEEEADDIPY*
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Institute for Fundamental Biomedical Research
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