Scaffold Ga0119960_1002550

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0119960_1002550

Scaffold Ga0119960_1002550

Overview

Basic Information
Taxon OID	3300014811 Open in IMG/M
Scaffold ID	Ga0119960_1002550 Open in IMG/M
Source Dataset Name	Aquatic viral communities from ballast water - Michigan State University - AB_ballast water
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Michigan State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1099
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Aquatic → Aquatic Viral Communities From Harbor And Ballast Water - Michigan State University

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035193	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119960_10025501	F035193	N/A	MDGYPMPHLIGELSPVVHPKKWELIRLPVRKVDEQYIVYVADGFHRIYTDDTLPDVLKSKFAMILASEGRYMLDSRIIRMTLYTNTDFPELDEVGWRASETYFCLVVDRLTLESLKGGTLND*

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