Scaffold Ga0119960_1001752

Overview

Basic Information

• Taxon OID: 3300014811
• Scaffold ID: Ga0119960_1001752
• Source Dataset Name: Aquatic viral communities from ballast water - Michigan State University - AB_ballast water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Michigan State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1136
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Aquatic → Aquatic Viral Communities From Harbor And Ballast Water - Michigan State University

Source Dataset Sampling Location

• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014365	Metagenome	263	Y
F034150	Metagenome / Metatranscriptome	175	Y
F088497	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119960_10017522	F014365	N/A	MKTYQIFKNVSYEYFVEAESLEDAQTKIIEEQLAADSEELIEWVFCDEHDGVDWTYQPVTQS*
Ga0119960_10017523	F034150	GAGG	MTKGTNAQTKPQFIGQIVKFISPHANVWLYDICKQNPKYGALEWWALNDPTEEQKTQALEVAL*
Ga0119960_10017524	F088497	N/A	FPVTITSAEWIPTTEEMYWEMLEVVPPRAQKRGAFLVGEADYHNSEGYPVYSCFKRVGDNYYAKSMTFAQFTEEFIA*