Basic Information | |
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Taxon OID | 3300014811 Open in IMG/M |
Scaffold ID | Ga0119960_1000003 Open in IMG/M |
Source Dataset Name | Aquatic viral communities from ballast water - Michigan State University - AB_ballast water |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Michigan State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 4701 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (15.38%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Aquatic → Aquatic Viral Communities From Harbor And Ballast Water - Michigan State University |
Source Dataset Sampling Location | ||||||||
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Location Name | ||||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F011920 | Metagenome | 285 | Y |
F012345 | Metagenome | 281 | Y |
F030019 | Metagenome | 186 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0119960_100000311 | F030019 | N/A | MIVPELKDFEVYSPSELNFVYLMVTLWDEGDTDTNGEILAEYEIKIYDAYAHYKITKKTYDEKLTIKQTRECDDCLERLYEANTFEDAYVEAYNDDGTWWFI* |
Ga0119960_10000033 | F011920 | N/A | MDLSLKILYAKTTVWTVAQRIKNVRERLEKDKPEAQDYINGGKESEEYLLEAIQVINLLEDEITNLNRELNQLARRNAQLRVAYQELQEEIKYKNVEL* |
Ga0119960_10000039 | F012345 | AGGA | MRYKLTYKIGLAVVQEWILTSQSLAYWKKHDLLVTGRYQ* |
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