Scaffold Ga0119960_1000003

Overview

Basic Information

• Taxon OID: 3300014811
• Scaffold ID: Ga0119960_1000003
• Source Dataset Name: Aquatic viral communities from ballast water - Michigan State University - AB_ballast water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Michigan State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4701
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Aquatic → Aquatic Viral Communities From Harbor And Ballast Water - Michigan State University

Source Dataset Sampling Location

• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011920	Metagenome	285	Y
F012345	Metagenome	281	Y
F030019	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119960_100000311	F030019	N/A	MIVPELKDFEVYSPSELNFVYLMVTLWDEGDTDTNGEILAEYEIKIYDAYAHYKITKKTYDEKLTIKQTRECDDCLERLYEANTFEDAYVEAYNDDGTWWFI*
Ga0119960_10000033	F011920	N/A	MDLSLKILYAKTTVWTVAQRIKNVRERLEKDKPEAQDYINGGKESEEYLLEAIQVINLLEDEITNLNRELNQLARRNAQLRVAYQELQEEIKYKNVEL*
Ga0119960_10000039	F012345	AGGA	MRYKLTYKIGLAVVQEWILTSQSLAYWKKHDLLVTGRYQ*