NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119896_1050029

Scaffold Ga0119896_1050029


Overview

Basic Information
Taxon OID3300014810 Open in IMG/M
Scaffold IDGa0119896_1050029 Open in IMG/M
Source Dataset NameWastewater microbial communities from municipal sewage treatment plant in Nanjing, China - WX_IW_meta
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNanjing University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)568
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From Municipal Sewage Treatment Plants In Nanjing, China

Source Dataset Sampling Location
Location NameChina: Nanjing
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051895Metagenome143Y
F066742Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0119896_10500291F066742AGAAGGMNWQEGAAIAVVLLGLGAGAFLVAQRPSFWIEFGSLLGKALLPLAWRYVSKRMPPEEEAAWREAERRGQGDEWLKERQCRSSRLHHLKE*
Ga0119896_10500292F051895AGGAGMFTSIDRALVAAIRGLLFIVQTYTGFSMAWATPDTIATIIGLVTPVLVWAVPNKKVA*

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