Scaffold Ga0119896_1024004

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0119896_1024004

Scaffold Ga0119896_1024004

Overview

Basic Information
Taxon OID	3300014810 Open in IMG/M
Scaffold ID	Ga0119896_1024004 Open in IMG/M
Source Dataset Name	Wastewater microbial communities from municipal sewage treatment plant in Nanjing, China - WX_IW_meta
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Nanjing University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	883
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From Municipal Sewage Treatment Plants In Nanjing, China

Source Dataset Sampling Location
Location Name	China: Nanjing
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051069	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119896_10240042	F051069	GAGG	MAYRVSISSTELVTRAEVVAYAKIENTDENTIIDALITSSREELEKLLKIPLITQVWAQTYDSFIEPVYAPMIPITSAALEIADSDGNFSANTYISAKKDTGRIAPTDVFSPSLQFDSFKITFTYTVSAIDATLKTAIMELTSYRFYNRGNLEAAKIPASVLSMVGHLRVFSV*

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