NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119896_1003798

Scaffold Ga0119896_1003798


Overview

Basic Information
Taxon OID3300014810 Open in IMG/M
Scaffold IDGa0119896_1003798 Open in IMG/M
Source Dataset NameWastewater microbial communities from municipal sewage treatment plant in Nanjing, China - WX_IW_meta
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNanjing University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2891
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From Municipal Sewage Treatment Plants In Nanjing, China

Source Dataset Sampling Location
Location NameChina: Nanjing
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010760Metagenome / Metatranscriptome299Y

Sequences

Protein IDFamilyRBSSequence
Ga0119896_10037986F010760N/AMIKEYKMAKIDISNIVKVYSGKCGCMCGCLGKYSYTADGAINYGPGYDVSDKVNERSVKIIAGKVLNHPNVKFEDNYAYVEDRAANKNQVVYFKKAA*
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