NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119946_1009307

Scaffold Ga0119946_1009307


Overview

Basic Information
Taxon OID3300014801 Open in IMG/M
Scaffold IDGa0119946_1009307 Open in IMG/M
Source Dataset NameAquatic microbial communities from drinking water treatment system in Nanjing, China - Filtered water - FW
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNanjing University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1042
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment System In Nanjing, China

Source Dataset Sampling Location
Location NameChina: Nanjing
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019122Metagenome / Metatranscriptome231N

Sequences

Protein IDFamilyRBSSequence
Ga0119946_10093071F019122AGGMSERAPRRYTDGSVTFEGGIDAGVMPSEVDKNQVSFAVNASFRQGFVAPRPGFVQQDYDLCVTITADNAEITADQTNVTADGWSEECYGPQGLTGTFQCALPYIADDGRTFILMLISGKVGLYNCAQNNAQNLSVTADLENPSNLLDGWMVQAENFVVIQDGFSKPLIFNGTNLRRAKDDEIKCGKVMAYVNGRIWYALPNGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGNPDTSLGQGPLLVFTPRYVFSVQAPVDRDVWKNLNYPIQAISLLTSGALGARSAITVNGDVFYRAID
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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