Scaffold Ga0134426

Basic Information
Taxon OID	3300014781 Open in IMG/M
Scaffold ID	Ga0134426_100026 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from obese patients in Germany - AS62_24
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hohenheim
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014781 Open in IMG/M

Scaffold ID

Ga0134426_100026 Open in IMG/M

Source Dataset Name

Human fecal microbial communities from obese patients in Germany - AS62_24

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hohenheim

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	157344
Total Scaffold Genes	196 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	61 (31.12%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

157344

Total Scaffold Genes

196 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

61 (31.12%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Source Dataset Sampling Location
Location Name	Germany
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Germany

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F074964	Metagenome	119	N
F090484	Metagenome	108	N
F099406	Metagenome	103	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0134426_100026102	F074964	N/A	MITKKNVNKLQNAVIKENAANLVGAVKLYNALFANGADLKAICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDNKVDKEKGVEAKTADWCAENVVYGSEYKSFGFTTAESLETKKSTKWLIKENDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*
Ga0134426_10002656	F099406	GAG	MSEVGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSDMTWGDHITKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDNVASTETKNVYNEYILVTEESGGKVLESLGMVSTGVDSNYLDLSMFSGNSGILDEASFGKVLDAYNNKITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFSNADSAVGASEYDIQIQVGTFVVIQDKTYEAMNNMVQLSNTILSYLNFMAMPPKVVTTLANLPKYAHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVVVPKNSFIELSIWYINDKLVIRVGEQA*
Ga0134426_10002678	F090484	N/A	MIKISRRDSRIRFKNKKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVKNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVSVAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKSGFNEVRDMYAEFAGEMAKAVGSVSEDIYMYVKAEQFKEKIENMDISIQSLPNYNTTVGNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0134426_100026

Overview

Ecosystem & Geography

Associated Families

Sequences