Scaffold Ga0157377_10000116

Overview

Basic Information

• Taxon OID: 3300014745
• Scaffold ID: Ga0157377_10000116
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54885
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (45.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002324	Metagenome	571	Y
F013826	Metagenome / Metatranscriptome	268	Y
F036379	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157377_1000011616	F036379	GAG	MMELDVYTDMMSVDVFTEQRLPLQERVVDKLADIMFASDMILDMLRHDREIGHLSSVEPSVRRVYDSVNELMKQLTD*
Ga0157377_1000011655	F002324	GGAGG	MGEIKLFQICYEGELTAEVSHAMRRLGAEPNFDQSWYVWLSDERHAAPLVRWLRSQVDAEARLLVACSQFTTSRDFLLIRHSLTPDADYSELHRAIERLGVVVELPFESTFVVQSEDRTDVQTLGRALGELCPDEALMVTGVSHDWAYCDAGVSRMCVAAAADALQFRTF*
Ga0157377_1000011657	F013826	N/A	MAVCWRCPECSEVSCEVDASAIGNPVACDHCGRPFPPQDTLCAVCDAPNPWSRRDSVHFLCRECGTTQTYHYSRAS*