Scaffold Ga0157377_10000085

Overview

Basic Information

• Taxon OID: 3300014745
• Scaffold ID: Ga0157377_10000085
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70930
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (52.63%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003710	Metagenome / Metatranscriptome	473	Y
F008503	Metagenome	332	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157377_1000008528	F003710	N/A	MLIKGMTPQEIRVLQEFRRVTSESLSVATIQTIKHPFGGGEAPALSLVDKGYLATDAARENFSLTPKGKEFLAYDPKPEFEEGGAVAGDESAG*
Ga0157377_1000008570	F008503	N/A	VSKKPDDDVVFLPLLSWRPMKKVLIAVAAIALVAWVISWFRVPQAVATSAARPWPGGLGTLDSVPERLPPLHANDGSRKLTVLANALPKNDAVDGFVAREVARGELTIGEPPALSDVSAIRELLLREPVVWERHEGIGGGNDDTARRTAQMTVARALVASALAKARANDSAAWEELHAVWKLARSLDGHYQMMVQTAALAMARTVNAVAWKMPLPAPAWFGELQERDDVRPLLEAYQHQTASYWRDGAQVFPTKSLADSVEHDRLIAEETFNNTRCDVSPRMNELGVDLSSVWRRAFRYRAEREATANALRAREGKPIEAASRCTDGGWAFDGTTLRFSREIATAPPDKPMPLVLRVKNLAYTP*