Scaffold Ga0135282_10118

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0135282_10118

Scaffold Ga0135282_10118

Overview

Basic Information
Taxon OID	3300014716 Open in IMG/M
Scaffold ID	Ga0135282_10118 Open in IMG/M
Source Dataset Name	Maize phyllosphere microbial communities from California to study drought stress - PHYLLO11_watered_CA_Berkeley
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1112
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Maize Phyllosphere → Maize Phyllosphere Microbial Communities From Texas And California To Study Drought Stress

Source Dataset Sampling Location
Location Name	USA: Berkeley, California
Coordinates	Lat. (^o)	37.53128	Long. (^o)	-122.7598	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029075	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0135282_101181	F029075	GGA	LVAAQVQDFGPAHATATTGFLAASTAEGGNECGGSVSEFFDFTDSGSSVEWTEESSEEDLDYFAALDEAAAEAALHAADAPGVPGPSTGHRRRRAVAKRRISAEEGARLRVSRVGRQELLSLPAVSGVGEGELRSLFAGEELRIMLFNYREMGIIPKVEPM*

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