NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0135282_10114

Scaffold Ga0135282_10114


Overview

Basic Information
Taxon OID3300014716 Open in IMG/M
Scaffold IDGa0135282_10114 Open in IMG/M
Source Dataset NameMaize phyllosphere microbial communities from California to study drought stress - PHYLLO11_watered_CA_Berkeley
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1124
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Maize Phyllosphere → Maize Phyllosphere Microbial Communities From Texas And California To Study Drought Stress

Source Dataset Sampling Location
Location NameUSA: Berkeley, California
CoordinatesLat. (o)37.53128Long. (o)-122.7598Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075851Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0135282_101141F075851N/AMARVRSTARVEREGDETEASETVPISEAMQRSGLVTAEEMPAAEANPTAAEGEGNIEETDSEDDYRIAMPSKPSHLDFGKSTVSKVDLAKMVKADFFSEDQKKLLRFG

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