Scaffold Ga0134412_100101

Overview

Basic Information

• Taxon OID: 3300014712
• Scaffold ID: Ga0134412_100101
• Source Dataset Name: Human fecal microbial communities from obese patients in Germany - AS62_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hohenheim
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57523
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (82.69%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Source Dataset Sampling Location

• Location Name: Germany
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075480	Metagenome	119	N
F082714	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134412_10010110	F075480	AGGAG	MNKTKQEKWQRAYGDTPDSFRQRVAASLPKGEESRHVAFPRRAMVLAAALVLVLTTAYAAVVTHTELVWNAGHPIENEADDRLGLLTGKAGTSGDSLTIGGVTFTVQDGIYSPETGQLFASAVISADESVQLVGVESDMEWEVRAVTPVSEKLDPSGISWAEWAEQNGKTLVPVRMEIRGSEQFPNIPMFCDFLTQNPDGTVSVGFQVDLSEEDVSHLKSCEVQLECRVGVFGKDGKATQWQKEILTATITFK*
Ga0134412_10010136	F082714	AGGA	MVVGIRFAADAPVRTVLQAVLPIFSTADVDFLVREYWVCTFGNGLPERRFTAQKMQRAVDALTPDEHAELFTIYALPHDAPDTPPSSCEDFCARRFTMAFYAYDGDGYALLAQSEEQVRAVIETLRKAVEIRSVEAVECETLARWQF*