Scaffold Ga0134412

Basic Information
Taxon OID	3300014712 Open in IMG/M
Scaffold ID	Ga0134412_100011 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from obese patients in Germany - AS62_18
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hohenheim
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014712 Open in IMG/M

Scaffold ID

Ga0134412_100011 Open in IMG/M

Source Dataset Name

Human fecal microbial communities from obese patients in Germany - AS62_18

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hohenheim

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	145586
Total Scaffold Genes	131 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	106 (80.92%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

145586

Total Scaffold Genes

131 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

106 (80.92%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Source Dataset Sampling Location
Location Name	Germany
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Germany

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F051934	Metagenome	143	N
F077319	Metagenome	117	N
F082715	Metagenome / Metatranscriptome	113	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0134412_10001130	F051934	N/A	MGLMRRLAAAALAAVLLLSTALGERVTFRLSADIDPVQYPAQERKLAQGLKSLFRLLTVEGDVVASDGSFDARIDLGLTNAPEKTATRIRFFGLDSHWGIQATDLGGETLMVNQLAWLEFAIKAYNHLDLPLQRVFLWLSPYAHTSAWAGLRQEIADLAAQETSGRLENTALITCAEEIARLSEDDRALYYYIEAFGLESGTDANIFDALATLPEYVEANFPDGLSIEHTENGVSWQNGEKTVFSYADADGTQVVSLHLPDLVDFSATLRRDALLFTGALSLQSDVLNADVSFSLPASYPVTLPFYAQIDADGMMTGDDGIHLAFEGEAQGDTITIRRIQPDHSATMMTLTVKVIQVVEGTVKYAPEDVQGTNVLSVDGPALAELMGRIGKPMVRKVTQWLAALPAELVQGAMDAMEDSGLLGTLTDAILNGEAGEY*
Ga0134412_10001172	F077319	GGAG	MQENTVCAANCTVQEKRGGQKIMLIRNATLQMSATERTCMDVRVMNGCVWEMGAALVKGLYEAETDLRGDVLMPGRMLETPIPAADEKALRLLCRRLYREGVRYFVADCPADALLRVQNRPERRGALPVTALPNPEPLRSGTGMPLTRWTAAGEFVGMMDEHSGD*
Ga0134412_10001184	F082715	AGGAG	MMKFMKRALSLLISAMLLLGCFALAEETPLLPIAIVSYDLTDEATTATLSALIEPKENALTRWERVVLSDGREAWVICQFDQATMSNAWSRVIDAETQEVLQEDTTDTGFFATAQARWESAKGIYALWSIQDKMLFDRLYAMAPCYGEPVEGDLTQEEALAAALNVTGLTAADYDAVGYGYIMGSSEQNGTWQVFFVKGNDVVSTVNLDARDATILLVEPDEEGNG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0134412_100011

Overview

Ecosystem & Geography

Associated Families

Sequences