Scaffold Ga0134314_104668

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134314_104668

Scaffold Ga0134314_104668

Overview

Basic Information
Taxon OID	3300014711 Open in IMG/M
Scaffold ID	Ga0134314_104668 Open in IMG/M
Source Dataset Name	Surface water microbial communities from Bangladesh - BaraHaldiaSW0111
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Tennessee
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	907
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location
Location Name	Bangladesh: Bara Haldia, Matlab upazilla
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034147	Metagenome / Metatranscriptome	175	Y
F059884	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134314_1046682	F034147	N/A	MAKYHSAPFKEGEIFFYPNLGALANFEDFTGLGVAEAFGGGKSPKLELIYALLHECHKVASLRKSVPVVSIDELKLWIDGKQVMKLFNAIIADLLDELGIGEAVLEEKKT*
Ga0134314_1046683	F059884	GAG	MLIVGRTKLPYDQLFCLNRKELKAVIRGHEIDQKDLIESLRVHALIGLQPHMKKGSQLSPSKVWPLPWDEKPKPFTSTKEDFAKASKLLEIADKLKRNGKSTDRS*

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